https://doi.org/10.1140/epjb/s10051-023-00540-z
Regular Article - Statistical and Nonlinear Physics
Theoretical investigation of the pathway-based network of type 2 diabetes mellitus-related genes
1
Center for Nonlinear Complex Systems, Department of Physics, School of Physics and Astronomy, Yunnan University, 2 Cuihu North Road, 650091, Kunming, Yunnan, People’s Republic of China
2
Department of Statistics, Modelling and Economics, UK Health Security Agency, 61 Colindale Avenue, NW9 5EQ, London, UK
3
Medical Research Council Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College of Science, Technology and Medicine, Norfolk Place, W2 1PG, London, UK
d kfcao163@163.com, kfcao@ynu.edu.cn
Received:
28
November
2022
Accepted:
19
May
2023
Published online:
23
June
2023
Complex network is an effective approach to studying the characteristics and interactions of complex systems, which can be used to analyze the core functions and global behavior of complex biological systems. Type 2 diabetes mellitus (T2DM), the most common type of diabetes mellitus, is a complex polygenic metabolic disease associated with genetic and environmental factors. How the complex interactions between T2DM-related genes affect the pathogenesis and treatment of T2DM is not yet fully understood. By applying the network approach to biological data, this study constructs a pathway-based network model of T2DM-related genes to explore the interrelationships between genes. Analysis of statistical and topological characteristics shows that the network exhibits the small-world rather than scale-free property, with a high average degree of 99.22, revealing close and complex connections between these genes. To determine the key hub genes of the network, an integrated centrality is used to comprehensively reflect the contribution of the three centrality indices (degree centrality, betweenness centrality and closeness centrality) of nodes; by taking the threshold of 0.70 for integrated centrality, nine key hub genes are identified: PIK3CD, PIK3CA, MAPK1, PIK3R1, PRKCA, AKT2, AKT1, TNF and KRAS. These genes should play an important role in the occurrence and development of T2DM, and their identification will provide relevant and useful knowledge for further biological and medical research on their functions in T2DM (especially in the development of multi-target drugs for T2DM). This further provides clues for exploring the pathogenesis and treatment of T2DM.
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© The Author(s), under exclusive licence to EDP Sciences, SIF and Springer-Verlag GmbH Germany, part of Springer Nature 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
